BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB027D11SP1|AL428726
(855 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig442 1545 0.0
>3x_Contig442
Length = 2059
Score = 1545 bits (779), Expect = 0.0
Identities = 840/852 (98%), Gaps = 7/852 (0%)
Strand = Plus / Minus
Query: 1 gatccgtgatactgacgataggctcagtcatatgattattttcctgtactagggagtcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1520 gatccgtgatactgacgataggctcagtcatatgattattttcctgtact-gggagtcct 1462
Query: 61 agagacccagttggaatgccagcagtcataccaatgggcatgcccattggcatgccattn 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1461 agagacccagttggaatgccagcagtcataccaatgggcatgcccattggcatgcccatt 1402
Query: 121 gncactgccatctgagtgttgcagcatgcaacactnagancatctcaacgaacccgaaat 180
| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 1401 ggcactgccatctgagtgttgcagcatgcaacactcaga-catctcaacgaacccgaaat 1343
Query: 181 gggactcgttagtcttgtcgttatgcttctcaacatgtccgtttgccacactctcctcga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 gggactcgttagtcttgtcgttatgcttctcaacatgtccgtttgccacactctcctcga 1283
Query: 241 gttgtaattgtcttgataaacaaggttccctgaaaacagtaccttcacacaggtagagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 gttgtaattgtcttgataaacaaggttccctgaaaacagtaccttcacacaggtagagac 1223
Query: 301 tcgctaaccctcttatatattagtctcacacctcttactcttcaaggtctgtatcagtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 tcgctaaccctcttatatattagtctcacacctcttactcttcaaggtctgtatcagtct 1163
Query: 361 tctcatgttgaagactgaaaaattttgggccttatggatagtgcccgggtaacctcatga 420
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 1162 tctcatgttgaagactgaaaaattttgg-ccttatggatagtgcccgg-taacctcatga 1105
Query: 421 aatttttcaattggtgatgatgtttaaagattggaaaaccgaatatcatatgaactgata 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 aatttt-caattggtgatgatgtttaaagattggaaaaccgaatatcatatgaactgata 1046
Query: 481 tgatgagacatgagatgtggatgcagttcagaaggtacaatcggtgttctttggttaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tgatgagacatgagatgtggatgcagttcagaaggtacaatcggtgttctttggttaata 986
Query: 541 gtacatcatatatcaggtatcggatatcagattttagtaggcgaagtgtactagaggttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 gtacatcatatatcaggtatcggatatcagattttagtaggcgaagtgtactagaggttt 926
Query: 601 aagctatctttgcgcctttgttttctggtttaatcagttttttctttcatttctttttgg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 aagctatctttgcgcctttgttttctggtttaatcagttttttctttcatttctttttgg 866
Query: 661 tttgattctaagggaataacgatgcttgcttcgagaacaccagtggtttaccgggctaag 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tttgattctaagggaataacgatgcttgcttcgagaacaccagtggtttaccgggctaag 806
Query: 721 cccatgactcgtcccattatggggttcgttcgtaatgctttggggttggatcctccggct 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cccatgactcgtcccattatggggttcgttcgtaatgctttggggttggatcctccggct 746
Query: 781 tcgc-ggacggatcctaccccagagaataggttccatccatgggaccaatctccttcgcc 839
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcgccggacg-atcctaccccagagaataggttccatccatgggaccaatctccttcgcc 687
Query: 840 cgatttgcgcga 851
||||||||||||
Sbjct: 686 cgatttgcgcga 675
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5436
Number of Sequences: 1807
Number of extensions: 5436
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 855
length of database: 10,358,551
effective HSP length: 16
effective length of query: 839
effective length of database: 10,329,639
effective search space: 8666567121
effective search space used: 8666567121
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)